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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00005577-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 140aa MW: 16123.8 Da PI: 5.8364 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.5e-19 | 21 | 72 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd + + +r +lg f taeeAa+a+++a+ +++g+ WALNUT_00005577-RA 21 RYRGVRRRP-WGKFAAEIRDSTR---QgARLWLGAFNTAEEAARAYDQAAYSMRGN 72 6********.**********322...24*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.6E-33 | 21 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-14 | 21 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 21 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 21 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.42 | 21 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.02E-27 | 21 | 80 | No hit | No description |
PRINTS | PR00367 | 9.5E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MEETPKCSSV KDQDGDQKDV RYRGVRRRPW GKFAAEIRDS TRQGARLWLG AFNTAEEAAR 60 AYDQAAYSMR GNMAILNFPH EYPPSPNLYS PNSASSSTFQ NVERTSSRSH ELGKEVFEFE 120 YFDDKLLEEL LDFENKAKNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-35 | 21 | 126 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018827144.1 | 1e-102 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 5e-44 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2I4F665 | 1e-100 | A0A2I4F665_JUGRE; ethylene-responsive transcription factor ERF098-like | ||||
STRING | XP_004292207.1 | 4e-47 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 7e-24 | ERF family protein |
Publications ? help Back to Top | |||
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