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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00004984-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 29238.9 Da PI: 5.467 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48 | 3.2e-15 | 61 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ + Wv+e +++++ + r++lg++ +e+Aa+a++aa+++++g WALNUT_00004984-RA 61 LYKGVRQRN-GKNWVSE---VCTGQkSKSRIWLGTYAAPEMAARAYDAAALAIRG 111 69****988.788****...77755455************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-11 | 60 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.20E-11 | 60 | 121 | No hit | No description |
PROSITE profile | PS51032 | 18.663 | 61 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-21 | 61 | 125 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-25 | 61 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 61 | 121 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.5E-9 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-9 | 101 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MDSENIQPLS SSSSSNSSCQ LSPCSARQNL NPPLISQAPC ISSQKRIKFG RKKFKVTRYP 60 LYKGVRQRNG KNWVSEVCTG QKSKSRIWLG TYAAPEMAAR AYDAAALAIR GTMAVLNFPD 120 SAWLVPRARS SSPRDIQEAA FMAAEAFRPG AVSSSSCSSN TTDLLPNKTK DKVLETSKRE 180 NKDQKVLEPL SLEIISANKS SSDDDEEVPN QYSTFFFDEE ALFNMPGLLD SMAEGLILTP 240 PAIGRGFDWD DHDFACDMDL TLWSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-11 | 62 | 119 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018833141.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A2I4FNB0 | 0.0 | A0A2I4FNB0_JUGRE; dehydration-responsive element-binding protein 1F-like | ||||
STRING | XP_002532187.1 | 7e-65 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-33 | C-repeat-binding factor 4 |