PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00004496-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | WRKY | ||||||||
Protein Properties | Length: 442aa MW: 49173.8 Da PI: 8.4502 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.9e-30 | 130 | 188 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gCp++k+vers dp v+++tY++eHnh+ WALNUT_00004496-RA 130 SDMWAWRKYGQKPIKGSPYPRSYYRCSSSkGCPARKQVERSPLDPGVFIVTYTSEHNHS 188 79*************************998****************************7 PP | |||||||
2 | WRKY | 34.7 | 3.6e-11 | 414 | 437 | 1 | 24 |
---SS-EEEEEEE--TT-SS-EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsY 24 ldDg++WrKYGqK vk+s +pr Y WALNUT_00004496-RA 414 LDDGFRWRKYGQKAVKNSIHPRCY 437 59********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.6E-31 | 115 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.65 | 124 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-26 | 127 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 129 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.8E-26 | 131 | 187 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.3E-11 | 401 | 437 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-9 | 408 | 437 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.691 | 409 | 437 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0012 | 414 | 442 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-7 | 415 | 437 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MSEFACCMED WDLQAVVRGC INIEAPTGIL GDPKSCFPPM NAVEDGALSF PENSETTTVS 60 DKLEMLYKPF YPVLNPVNSS QTILASSISA PKELKEPDQI KQSIKSPKLR RKNQQKRVVQ 120 YVTAAEGFCS DMWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CPARKQVERS PLDPGVFIVT 180 YTSEHNHSRP TRRNSLAGST RSNLTTPRKK TKSSQYSSKV LSPTTPLMAS IEDEFVQNAS 240 LKKEEQQILV QETDKGNGIF NIDDIVLENE LFPSLEDFEE LASESAPLSG CFLDSLLENI 300 PKLIPWGAVV MDELPPPLTQ NINVPISYSL PSPPHDLMQT QIASDIDWVS LLSAGPNFKF 360 GNQNPSSTSK PLTATNGAVG LENGSTKHKG RVGRTKKTIP PRIAFHTKSP DDILDDGFRW 420 RKYGQKAVKN SIHPRCYNFL PQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-19 | 116 | 191 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-19 | 116 | 191 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 112 | KLRRKN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00448 | DAP | Transfer from AT4G23550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018829090.1 | 0.0 | PREDICTED: probable WRKY transcription factor 29 | ||||
TrEMBL | A0A2I4FBQ3 | 0.0 | A0A2I4FBQ3_JUGRE; probable WRKY transcription factor 29 | ||||
STRING | VIT_02s0025g00420.t01 | 4e-83 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6217 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 1e-45 | WRKY family protein |