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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00004468-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 326aa MW: 37089.2 Da PI: 4.85 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 8.1e-19 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g WALNUT_00004468-RA 114 KFRGVRQRP-WGKWAAEIRDPL----RrIRLWLGTYDTAEEAAMVYDNAAIQLRG 163 89*******.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 113 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-12 | 114 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-21 | 114 | 171 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.354 | 114 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.61E-32 | 114 | 171 | No hit | No description |
SMART | SM00380 | 6.6E-37 | 114 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MNHHSVNAIP PIKYTEHRNI TKLVRPVPEE IKRRVVRISV TDGDATDSSS DEEDGEEVCF 60 RRQRVKKFID EITIESCSSQ NDGVSRSRSA RSARKKTARV SESHRVLKVP GARKFRGVRQ 120 RPWGKWAAEI RDPLRRIRLW LGTYDTAEEA AMVYDNAAIQ LRGPDAFTNF ATPPTSKHPT 180 ENKPMRCSGY NSGEESHNNR LCSPTSVLRC SSPSNEEMEL QSPEIIKEIV QVGDIQDESC 240 MSENFLEFSE YSTFDSLIPN DIFDFESPAT SLFEKTSLGD NFFEEECGDV FLSSCENFGF 300 DFSRWHVDDY FQDIGDIFGS DPLMAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-19 | 113 | 170 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-19 | 112 | 170 | 3 | 62 | ATERF1 |
3gcc_A | 6e-19 | 112 | 170 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018829056.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
Refseq | XP_018855058.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | A0A2I4FBN4 | 0.0 | A0A2I4FBN4_JUGRE; ethylene-responsive transcription factor CRF2-like | ||||
STRING | EMJ10054 | 1e-124 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 2e-64 | cytokinin response factor 2 |