PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00004070-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 341aa MW: 37629.9 Da PI: 5.2211

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00004070-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.3	3.8e-27	43	136	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rWt+qe+l+Li+++r +e+r + ++ l +p+W++vs++++++g++r+p+qC+++w+nl+++ykki+e+e++ +++++s +++ + WALNUT_00004070-RA 43 RWTRQEILVLIQGKRVVETRGSGRSaglpfgsgLVEPKWASVSSYCKRHGVNRGPIQCRKRWSNLAGDYKKIREWESQAKEGTESFWVMRN 133 8*****************9965446666667********************************************999999999999 PP trihelix 84 qle 86 +l+ WALNUT_00004070-RA 134 DLR 136 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.7E-12	43	132	No hit	No description
PROSITE profile	PS50090	6.504	43	108	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.0E-4	43	107	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MASETQLISL AQYGVDGETD GARNGVQARP TSVDGDKTPR LPRWTRQEIL VLIQGKRVVE 60 TRGSGRSAGL PFGSGLVEPK WASVSSYCKR HGVNRGPIQC RKRWSNLAGD YKKIREWESQ 120 AKEGTESFWV MRNDLRRERK LPGFFDKEVY DILESGSGMA PETPATALAL APVPTPGHVA 180 EDADEAGGLF DSQRSAVADD GLFSDFEQED SGRSSEKAME VSIPAPMPIS EKHYQPVLRG 240 SHGQGTTNEK QPASNPEIGS TSLEDRKRKR VAAEEEDEET VSLQNQLTDV LKRNGQMLTA 300 QLEAQNENFH LDREQRKDDV NSLIGVLNKL SDALARIADK L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018841649.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	1e-108	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2I4GCK9	0.0	A0A2I4GCK9_JUGRE; trihelix transcription factor ASR3-like
STRING	XP_002512665.1	1e-147	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-104	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]