PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004052-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 296aa    MW: 32261 Da    PI: 5.102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004052-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-184795355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr+++ +gr++AeIrdps+   + r++lg+f taeeAa a+++a+++++g
  WALNUT_00004052-RA 47 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFNTAEEAALAYDRAARSMRG 95
                        67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-2945102No hitNo description
PROSITE profilePS5103220.45546103IPR001471AP2/ERF domain
SMARTSM003804.0E-3546109IPR001471AP2/ERF domain
PRINTSPR003678.1E-84758IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-2947103IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2047104IPR016177DNA-binding domain
PfamPF008471.5E-114995IPR001471AP2/ERF domain
PRINTSPR003678.1E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNFNNSPSSS SSSSSSKSKR KQQQQQQPQL VLLENQQQQK QEGEARFLGV RRRPWGRYAA  60
EIRDPSTKER HWLGTFNTAE EAALAYDRAA RSMRGSKART NFVYSDMPSG SSITSIISPD  120
ESSQHDISAL FAPDQQKNDA NTTHSSTQLF FGQDPFINAT TCPFSSGDGW AQGTTDFGSS  180
YQPITAITDG GQARAHPSSC SSHDTTELPP LPPDASTCYG AGVMGSNMGQ EVWSDTNCFE  240
LTEQTKNGLD SAVSGPYMDF YSNEFVQHSP LFGRMPPVPD SGSDAFGLGS SSPYYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1947102359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841621.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9FZ901e-48ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A2I4GCI80.0A0A2I4GCI8_JUGRE; ethylene-responsive transcription factor LEP-like
STRINGEOX995731e-109(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.14e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]