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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00004052-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 32261 Da PI: 5.102 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 47 | 95 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f taeeAa a+++a+++++g WALNUT_00004052-RA 47 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFNTAEEAALAYDRAARSMRG 95 67******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.13E-29 | 45 | 102 | No hit | No description |
PROSITE profile | PS51032 | 20.455 | 46 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-35 | 46 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-8 | 47 | 58 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-29 | 47 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-20 | 47 | 104 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-11 | 49 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-8 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MNFNNSPSSS SSSSSSKSKR KQQQQQQPQL VLLENQQQQK QEGEARFLGV RRRPWGRYAA 60 EIRDPSTKER HWLGTFNTAE EAALAYDRAA RSMRGSKART NFVYSDMPSG SSITSIISPD 120 ESSQHDISAL FAPDQQKNDA NTTHSSTQLF FGQDPFINAT TCPFSSGDGW AQGTTDFGSS 180 YQPITAITDG GQARAHPSSC SSHDTTELPP LPPDASTCYG AGVMGSNMGQ EVWSDTNCFE 240 LTEQTKNGLD SAVSGPYMDF YSNEFVQHSP LFGRMPPVPD SGSDAFGLGS SSPYYH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 47 | 102 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018841621.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q9FZ90 | 1e-48 | ERF87_ARATH; Ethylene-responsive transcription factor ERF087 | ||||
TrEMBL | A0A2I4GCI8 | 0.0 | A0A2I4GCI8_JUGRE; ethylene-responsive transcription factor LEP-like | ||||
STRING | EOX99573 | 1e-109 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 4e-33 | ERF family protein |
Publications ? help Back to Top | |||
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