PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003583-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family G2-like
Protein Properties Length: 235aa    MW: 26223.6 Da    PI: 5.7483
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003583-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.54.4e-1621502655
             G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         AtPk +l++m+v+gLt++hvkSHLQkYRl
  WALNUT_00003583-RA 21 GATPKGVLRVMGVPGLTIYHVKSHLQKYRL 50
                        69***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS006680821IPR018086NADH:ubiquinone oxidoreductase, subunit 1, conserved site
Gene3DG3DSA:1.10.10.603.6E-152151IPR009057Homeodomain-like
SuperFamilySSF466892.51E-62150IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-112251IPR006447Myb domain, plants
PfamPF143795.9E-2580126IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLKCERLPFD LPEAEEELVA GATPKGVLRV MGVPGLTIYH VKSHLQKYRL AKYLPESPGF  60
KDEKKSSGDS LSASDSSPGM QINEALRMQM EVQKRLHEQL EVQRQLQMRI EAQGKYLQKI  120
IEEQQKLGGA LKASETLPLD DDKQKQSRSD PPGGDSAGPS SPRKKQKLDD ELKDGFDSSV  180
TQKSHQKKVL VGTWDRDFYG SDAGFGLDLE TEFKEGEDAV AERAAPELDP MHRSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285524e-88FR828552.1 Rosa hybrid cultivar mRNA for putative MYB transcription factor (myb1 gene), cultivar Yellow Island.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822722.11e-150PREDICTED: myb family transcription factor PHL7-like
TrEMBLA0A2I4ETJ51e-149A0A2I4ETJ5_JUGRE; myb family transcription factor PHL7-like
STRINGXP_008240600.11e-102(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130132330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-48G2-like family protein