PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00003325-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 366aa MW: 39873.8 Da PI: 10.0896

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00003325-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.1	3.5e-21	60	151	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W+++e+ aLi+ +r+++ +lrrg+lk+++W+ev++ + ++ ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++ WALNUT_00003325-RA 60 CWSHDETVALIDSYRDKWYSLRRGNLKATHWQEVADSVarrcSAASPPKTAVQCRHKMEKLRKRYRTELQRARSMpVSRFTSSWVHFKRMD 150 7*******************************9999666566777899********************97799*********8 PP trihelix 87 a 87 a WALNUT_00003325-RA 151 A 151 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.6E-22	59	152	No hit	No description
SMART	SM00595	2.6E-13	68	157	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MASSSSPPPA DDAAAPTTPS GPPTAVGITL SLPAPPLPQS ETQPPASSAT TASRRLPPPC 60 WSHDETVALI DSYRDKWYSL RRGNLKATHW QEVADSVARR CSAASPPKTA VQCRHKMEKL 120 RKRYRTELQR ARSMPVSRFT SSWVHFKRMD AMEKGPSSGS SKKRVNVSDS DNDNDIDAED 180 DEDQDLYEEF KNGGGPNMRH MSKLYRNNGI GGGSGGGGGG SGGSGFRIRI PSGVGIAQPG 240 SKYFGKAEHK YNSNPNSTPN PNPSSSSGGN FGARVLRECN SAGSGKKERD PVTEMVSAIK 300 VLGDGFVKME QMKMEMAREI EAMRMEMEMK RTEMILESQQ RIVEAFAKAF SEKKKKKAKR 360 MPSPES

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MASSSSPPPA DDAAAPTTPS GPPTAVGITL SLPAPPLPQS ETQPPASSAT TASRRLPPPC  60
WSHDETVALI DSYRDKWYSL RRGNLKATHW QEVADSVARR CSAASPPKTA VQCRHKMEKL  120
RKRYRTELQR ARSMPVSRFT SSWVHFKRMD AMEKGPSSGS SKKRVNVSDS DNDNDIDAED  180
DEDQDLYEEF KNGGGPNMRH MSKLYRNNGI GGGSGGGGGG SGGSGFRIRI PSGVGIAQPG  240
SKYFGKAEHK YNSNPNSTPN PNPSSSSGGN FGARVLRECN SAGSGKKERD PVTEMVSAIK  300
VLGDGFVKME QMKMEMAREI EAMRMEMEMK RTEMILESQQ RIVEAFAKAF SEKKKKKAKR  360
MPSPES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018854752.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A2I4HF85	0.0	A0A2I4HF85_JUGRE; trihelix transcription factor ASIL2-like
STRING	Gorai.004G167100.1	1e-147	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	5e-71	Trihelix family protein