PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003306-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 473aa    MW: 52469.8 Da    PI: 6.5253
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003306-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19111162155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+++AeIrdp++ng   r++lg++ ++e+Aa a+++a+ k++g
  WALNUT_00003306-RA 111 PRFRGVRRRP-WGKYAAEIRDPKKNG--VRVWLGTYESPEDAALAYDRAAFKMRG 162
                         689*******.***********9998..*************************98 PP
2AP255.71.2e-17368418255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g ++AeIrdp +ng  +r +lg++ +ae+Aa a+++a+ k++g
  WALNUT_00003306-RA 368 QFRGVRRRP-WGTYAAEIRDPAKNG--ARMWLGTYESAEDAALAYDQAAFKMRG 418
                         58*******.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.06E-30111172No hitNo description
PfamPF008471.3E-13111162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-31112171IPR001471AP2/ERF domain
PROSITE profilePS5103223.551112170IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22112171IPR016177DNA-binding domain
SMARTSM003804.2E-39112176IPR001471AP2/ERF domain
PRINTSPR003671.3E-12113124IPR001471AP2/ERF domain
PRINTSPR003671.3E-12152172IPR001471AP2/ERF domain
CDDcd000181.87E-27368428No hitNo description
Gene3DG3DSA:3.30.730.103.1E-30368427IPR001471AP2/ERF domain
PROSITE profilePS5103223.156368426IPR001471AP2/ERF domain
SMARTSM003805.3E-36368432IPR001471AP2/ERF domain
PfamPF008471.6E-11369418IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-21369427IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MNLTEQGPMD SDLAVLESVR RYLLGDFEPT GSTFYSAMGF DNANVVCSDV CLHETWGTGT  60
GSLPLKADNA DVYGPLPDAV NFGWAPKNGV AVTAQIMEHS EVAVARDCQV PRFRGVRRRP  120
WGKYAAEIRD PKKNGVRVWL GTYESPEDAA LAYDRAAFKM RGSKAKLNFP HLIGSDNWEP  180
IRVTPKRRSL EPSSTSSDTV SPKPKRSKIR RGGSTALILE DSSDQLIESS CRSSSVVDDE  240
LEESYSDFAV LESIWQNLVD NDIHDDESTA TSVSAKVYEN KEASLYCRSS SFSSSSSLFL  300
KESWGDLPLK MDGTDDKVVY GSLRDAIDVG GHADPLVQTN YDKIMGTDMS THLSINNQEP  360
QVPRTELQFR GVRRRPWGTY AAEIRDPAKN GARMWLGTYE SAEDAALAYD QAAFKMRGSK  420
AKLNFPHLIG SHDWKPIKVT TKRSLRKPLT LSESCDGSQE PKLKRNKFIG TPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-27113426260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-27113433570ATERF1
3gcc_A1e-27113433570ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852800.11e-175PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A2I4H9H71e-174A0A2I4H9H7_JUGRE; ethylene-responsive transcription factor 13-like
STRINGEOX964593e-55(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-51ethylene-responsive element binding factor 13