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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00003114-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 27576.5 Da PI: 6.7902 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 39 | 91 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le+ Fe++ + +++ +LA++lgL+ rqV +WFqNrRa++k WALNUT_00003114-RA 39 KKRFSDEQIKSLESIFESDTRLEPRKKVQLARELGLQPRQVAIWFQNRRARWK 91 467*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.6 | 8.3e-39 | 38 | 129 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+r+s+eq+k+LE+ Fe++++Lep++Kv+lareLglqprqva+WFqnrRAR+k+k +E++y++L+++y++l+++ e+L+ke+++L +l+ WALNUT_00003114-RA 38 NKKRFSDEQIKSLESIFESDTRLEPRKKVQLARELGLQPRQVAIWFQNRRARWKSKYIEQEYRTLRDNYENLASQFESLKKEKQSLLIQLQ 128 69************************************************************************************99987 PP HD-ZIP_I/II 93 e 93 + WALNUT_00003114-RA 129 N 129 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.4E-16 | 27 | 97 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.73E-16 | 28 | 93 | No hit | No description |
SuperFamily | SSF46689 | 2.49E-18 | 30 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.767 | 33 | 93 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.1E-17 | 39 | 91 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-19 | 40 | 99 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.7E-6 | 64 | 73 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 68 | 91 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.7E-6 | 73 | 89 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-12 | 95 | 134 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEGRECKSYT PAVPEGRHDD QNLTCQQPRK RTNKKIMNKK RFSDEQIKSL ESIFESDTRL 60 EPRKKVQLAR ELGLQPRQVA IWFQNRRARW KSKYIEQEYR TLRDNYENLA SQFESLKKEK 120 QSLLIQLQNL GDLLGENHDG NGESSSKGLE GNSTVAGRSD DGSSDSETKA KSSCLQKGME 180 HKGVMFPYEE ENGVGSFGGG GHGFLNMNEP HGPLASLDEG YSTYDSGGLL DHLCSSSYWL 240 NSWS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018842791.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A2I4GFX1 | 0.0 | A0A2I4GFX1_JUGRE; homeobox-leucine zipper protein ATHB-12-like | ||||
STRING | XP_007136490.1 | 2e-66 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 4e-46 | homeobox 7 |