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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00003056-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | WRKY | ||||||||
Protein Properties | Length: 749aa MW: 80308.3 Da PI: 6.0499 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.5 | 9.8e-32 | 322 | 379 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g H+h+k WALNUT_00003056-RA 322 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHTHPK 379 7****************************************.***************85 PP | |||||||
2 | WRKY | 103.7 | 1e-32 | 539 | 597 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ WALNUT_00003056-RA 539 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 597 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.4E-28 | 320 | 380 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-25 | 320 | 380 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-36 | 321 | 379 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 322 | 378 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.469 | 322 | 380 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.6E-37 | 524 | 599 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-28 | 531 | 599 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.664 | 534 | 599 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-37 | 539 | 598 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-25 | 540 | 597 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MAGMDDNVVI IGDWVPPSPS PRTFLSALLG DDIGSRSVSE PPSSNRTEEI FLGSSESNTN 60 VKNNGAKDGV SGEKFTDLGS FPEHKSSCSR AGLMERMAAR AGFNAPRLNT QGIRSADLSS 120 NPDIRSPYLT IPPGLSPTTL LDSPVFLSNS LVQPSPTTGK FSLVPNGDSR SLTLISEAPD 180 RSKDNPFEDI NTSSFAFKPI TEPASSFFFG ASSKITSKTL PQQSFPSIEV SVQSESSFQS 240 VEHTNQTQNR SSLYSQADNS RSSTERDIGT NVSVADQTAF DAVGGSTEHS PPLDEQPDEE 300 GDQRGSGDSV AAGGGGGGAP SEDGYNWRKY GQKQVKGSEY PRSYYKCTHP NCQVKKKVER 360 SHEGHITEII YKGAHTHPKP PPNRRSAIGS TNPLMDMQLE IPEQAGPQSS NADGDLVWAS 420 SQKGTVPGAS DWRHDNLEVT SSAPVGPEYC NQSISVHAQN GAHFETGDVV DASSTFSNDE 480 DEDDQGTHGS VSLGYDGEGD ESESKRRKIE AYATEMSGAT RAIREPRVVV QTTSEVDILD 540 DGYRWRKYGQ KVVKGNPNPR SYYKCTSAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA 600 ARNSSHVNSG SSSAVPAQAS AAAIQNHVHR PEPSQVHTSM ARFERPASLG SFSLPGRLQL 660 GPSHGFSFGM SQPGLSNLAM AGLGPAQAKV PVMPVHPYLA QQRQASEIGF MLPKGEPKVE 720 PMSDPGLNLS NGSSVYQQIM SRLPLGPQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 322 | 600 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 322 | 600 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018814204.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Refseq | XP_018814209.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A2I4E479 | 0.0 | A0A2I4E479_JUGRE; probable WRKY transcription factor 2 | ||||
STRING | EMJ07626 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9524 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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