PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003056-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 749aa    MW: 80308.3 Da    PI: 6.0499
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003056-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.59.8e-32322379260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g H+h+k
  WALNUT_00003056-RA 322 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHTHPK 379
                         7****************************************.***************85 PP

2WRKY103.71e-32539597159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  WALNUT_00003056-RA 539 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 597
                         59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-28320380IPR003657WRKY domain
SuperFamilySSF1182903.79E-25320380IPR003657WRKY domain
SMARTSM007747.8E-36321379IPR003657WRKY domain
PfamPF031061.4E-24322378IPR003657WRKY domain
PROSITE profilePS5081122.469322380IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-37524599IPR003657WRKY domain
SuperFamilySSF1182901.7E-28531599IPR003657WRKY domain
PROSITE profilePS5081138.664534599IPR003657WRKY domain
SMARTSM007741.5E-37539598IPR003657WRKY domain
PfamPF031066.8E-25540597IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MAGMDDNVVI IGDWVPPSPS PRTFLSALLG DDIGSRSVSE PPSSNRTEEI FLGSSESNTN  60
VKNNGAKDGV SGEKFTDLGS FPEHKSSCSR AGLMERMAAR AGFNAPRLNT QGIRSADLSS  120
NPDIRSPYLT IPPGLSPTTL LDSPVFLSNS LVQPSPTTGK FSLVPNGDSR SLTLISEAPD  180
RSKDNPFEDI NTSSFAFKPI TEPASSFFFG ASSKITSKTL PQQSFPSIEV SVQSESSFQS  240
VEHTNQTQNR SSLYSQADNS RSSTERDIGT NVSVADQTAF DAVGGSTEHS PPLDEQPDEE  300
GDQRGSGDSV AAGGGGGGAP SEDGYNWRKY GQKQVKGSEY PRSYYKCTHP NCQVKKKVER  360
SHEGHITEII YKGAHTHPKP PPNRRSAIGS TNPLMDMQLE IPEQAGPQSS NADGDLVWAS  420
SQKGTVPGAS DWRHDNLEVT SSAPVGPEYC NQSISVHAQN GAHFETGDVV DASSTFSNDE  480
DEDDQGTHGS VSLGYDGEGD ESESKRRKIE AYATEMSGAT RAIREPRVVV QTTSEVDILD  540
DGYRWRKYGQ KVVKGNPNPR SYYKCTSAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA  600
ARNSSHVNSG SSSAVPAQAS AAAIQNHVHR PEPSQVHTSM ARFERPASLG SFSLPGRLQL  660
GPSHGFSFGM SQPGLSNLAM AGLGPAQAKV PVMPVHPYLA QQRQASEIGF MLPKGEPKVE  720
PMSDPGLNLS NGSSVYQQIM SRLPLGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36322600878Probable WRKY transcription factor 4
2lex_A1e-36322600878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814204.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_018814209.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2I4E4790.0A0A2I4E479_JUGRE; probable WRKY transcription factor 2
STRINGEMJ076260.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]