PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00003049-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 614aa    MW: 67606.8 Da    PI: 8.5204
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00003049-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-05162183223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C  C k F++   L  H+r+H
  WALNUT_00003049-RA 162 TCYVCRKKFPTMKALFGHMRSH 183
                         6********************9 PP
2zf-C2H216.42.6e-05433455123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+ksF+++  L  H+++H
  WALNUT_00003049-RA 433 YTCSLCNKSFPTHQALGGHMSSH 455
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.14E-591120No hitNo description
SMARTSM003550.2194116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.80694121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
PfamPF139121.2E-596116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286161188IPR007087Zinc finger, C2H2
SMARTSM003550.28161183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
PfamPF139121.9E-5163184IPR007087Zinc finger, C2H2
SuperFamilySSF576677.32E-6431460No hitNo description
SMARTSM003559.8E-4433455IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.762433460IPR007087Zinc finger, C2H2
PfamPF139122.5E-9433456IPR007087Zinc finger, C2H2
PROSITE patternPS000280435455IPR007087Zinc finger, C2H2
PfamPF139126.7E-4499524IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MDENQKSQIH PNMPCEEENA DYSRSRVLGE NTSGNGRLCI KLKISKAESD QFEHEQEQQH  60
PPAAAKCFPR IKADPFDHER VEEQASALAK EFPLVCNFCN KVFGSGKALG GHARMHVQAR  120
NKDLLDKIQK PKFKKHPTAA GDLSNASRAK TNASVAIMGE PTCYVCRKKF PTMKALFGHM  180
RSHPGREWRG VLPPPTEKNS ASSSSSTPSD DKIGSAAANF TTTEAPVLVD LSASLFRWKS  240
TGKRGRKSIP ASTSGYVSGL PQGLEEEGMQ EAIHDLMMLA NANPEKRLMD NFDPKAANID  300
SALTDAWNFP SRNDKLIRTD EAGSRREVLY KSINEDKGKG KAMLETAPPK MRTKLWVNDD  360
WPRNYYYRDE STAHKDLNRN DSGNGDLFPK DEISVKMMIR NRKKRDTKLL GLKPLRGAAD  420
RSHNQFPLTP SRYTCSLCNK SFPTHQALGG HMSSHNKLKY IQTTNEYVSA NDSATEYYGN  480
CANLIAQVDG TKSVLAGSTH QCKICNVETF PTGQALGGQK GSHWTSPVEI NSSKLTSPGE  540
AKAQISSRLT SPEEATAQSS QVTSTGEAKA QSSQVTSPGE ASQTGRRILG FDLNDLPAME  600
VEEGIVESIF DMFD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814073.10.0PREDICTED: uncharacterized protein LOC108986030 isoform X2
TrEMBLA0A2I4E3V60.0A0A2I4E3V6_JUGRE; uncharacterized protein LOC108986030 isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-19C2H2 family protein