PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00002780-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ARR-B | ||||||||
Protein Properties | Length: 713aa MW: 78049 Da PI: 5.7255 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 62 | 1.2e-19 | 212 | 255 | 1 | 45 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 kpr++W+ eLH++Fv av+qL G ekA+Pk+il+lm+v+gLt+e+ WALNUT_00002780-RA 212 KPRVVWSVELHRKFVAAVNQL-GLEKAVPKKILDLMNVEGLTREN 255 79*******************.********************987 PP | |||||||
2 | Response_reg | 81.8 | 2.1e-27 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ ++ll ++l+k +y +v+++ ++ al++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ +++ + WALNUT_00002780-RA 26 VLAVDDDPICLKLLDTLLRKCQY-QVTTTNQAVMALKMLRENKdkFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTQLVMKG 114 799********************.***************888888*******************87754.558****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + WALNUT_00002780-RA 115 VTHGACDYLLKPVRIEELKN 134 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 8.0E-158 | 1 | 702 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.99E-35 | 23 | 147 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 8.0E-43 | 23 | 147 | No hit | No description |
SMART | SM00448 | 1.3E-33 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.384 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.7E-25 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.54E-29 | 27 | 140 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-20 | 209 | 264 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-11 | 210 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-15 | 212 | 255 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MTVEDHKGGL AGEDVARDRF PLGMRVLAVD DDPICLKLLD TLLRKCQYQV TTTNQAVMAL 60 KMLRENKDKF DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTQL VMKGVTHGAC 120 DYLLKPVRIE ELKNIWQHVI RRKKFDSKDQ NKSLNEDRAL HGTEDGGRGF ISTGNADQDD 180 RLSRKRKEQN EDEEEDDEEN EHENDDASNQ KKPRVVWSVE LHRKFVAAVN QLGLEKAVPK 240 KILDLMNVEG LTRENKYRLY LKRINSVAAQ QASMVAALGG KDSSYLRMGS LDGFGEFRSL 300 AGSGRLSSSA LSSYTPGGMF GRLNSPAGLT LRGITSSGLV QPTGQNLSSS INTLGKFQSA 360 LLPSNQSASL FQGIPTSLEL NQLQQNKCTT RIRDFNPIKD SRGFTVTTSF SDSRVNVGSS 420 PSLLPGLSSN SLVLQGNPHQ AHNGGAFGSQ SSLGAASLTA DAFENCSGGS SNFLVHNQSN 480 ESWQGTVHSS RFSSNALPLN EPFNHDQLPS NNLSKSSTSP HIGNSSIDFP STSAVLAPLE 540 DSRGDVQCHE GVIGNVVHSM NYPSNQNWEE QKPDYNHNLN HTVSALNSLV PANGIVNPLS 600 QSLDQNTAIC SKSFDVSLIS QLHDGALSID QNSEVERYAL GTKMTPNEDY LFEQTRSLDG 660 FTQNSFGSLD DIMNTLMKRE QNQTMLCDGE FASDAYSLGS CISSVSRKSK KEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-18 | 210 | 265 | 3 | 64 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018850345.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like isoform X1 | ||||
TrEMBL | A0A2I4H2G0 | 0.0 | A0A2I4H2G0_JUGRE; two-component response regulator ARR12-like isoform X1 | ||||
STRING | VIT_11s0206g00060.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-116 | response regulator 12 |