PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00002633-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 276aa MW: 29245.1 Da PI: 8.8705 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.9 | 1.9e-09 | 83 | 108 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ WALNUT_00002633-RA 83 KTRLCNKYKTAEGCKFGDKCHFAHGE 108 8***********************96 PP | |||||||
2 | zf-CCCH | 35.6 | 1.6e-11 | 244 | 267 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC++f + GtC +G+rC+FaHg WALNUT_00002633-RA 244 KTKLCDNFTK-GTCTFGERCHFAHG 267 9*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.042 | 14 | 42 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7 | 14 | 41 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 15 | 40 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-7 | 16 | 39 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.6 | 22 | 39 | No hit | No description |
SuperFamily | SSF90229 | 1.7E-8 | 79 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-14 | 81 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.488 | 81 | 109 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 83 | 108 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 6.14E-15 | 143 | 224 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.1E-10 | 151 | 221 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.565 | 152 | 216 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 7.2E-16 | 153 | 222 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.52E-13 | 154 | 217 | No hit | No description |
Pfam | PF00013 | 6.6E-10 | 154 | 218 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-16 | 239 | 274 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-9 | 242 | 272 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.108 | 242 | 269 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-7 | 242 | 268 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 244 | 267 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MSATEVESFT TGIGSKSKPC TKFFSTSGCP FGEGCHFLHY VPGGIKVASQ MMNLGGNPAH 60 PPAARSSALP PLFPDSSSPT TVKTRLCNKY KTAEGCKFGD KCHFAHGEWE LGKPTATSYE 120 DPRAMGPISG RMGGRVEPPP QSHPAAASFG AFATTKLSVD ASLSGAIIGK NGVNSKHICR 180 VTGAKLSIRE HESDPTKRNI ELEGTFDQIN QATTMVQELI SNVRSTSGPP GRNPAGTTPS 240 GNLKTKLCDN FTKGTCTFGE RCHFAHGAEE LRRPGM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ393604 | 9e-40 | FQ393604.1 Vitis vinifera clone SS0AFA25YC11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018834630.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-104 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2I4FSK0 | 0.0 | A0A2I4FSK0_JUGRE; zinc finger CCCH domain-containing protein 14-like | ||||
STRING | cassava4.1_012715m | 1e-152 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-56 | C3H family protein |