PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00002149-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 444aa    MW: 49754.5 Da    PI: 6.7967
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00002149-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.17.7e-128454441374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaal......... 81 
                         +++lL++cAe +s +d+++a++l++ ls ++sp+gd+++Rl++ f++AL+ rl +    +y+a ++ +t+++  s++ ++a          
  WALNUT_00002149-RA  45 MRQLLTRCAELISRSDFSAAHRLVSILSGNSSPYGDSIERLVHQFAKALSLRLKN---CCYAAAAAATTTTSAaSASIIMAStpttaaata 132
                         589***************************************************9...5565554444444442555555558999999** PP

                GRAS  82 .....................klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgsp 150
                                                +++++P+++fshltaNqaIlea+++  +++Hi+Dfdi++GlQWp+L+qaLa+R+ +pp+lRiT+ g+ 
  WALNUT_00002149-RA 133 ltndrnnvdmtepeehlqscyLSLNQITPFVRFSHLTANQAILEAIDEGqKAIHILDFDIMNGLQWPPLMQALAERSYPPPMLRITATGH- 222
                         ***************99875444***********************755499**************************************. PP

                GRAS 151 esgskeeleetgerLakfAeelgvpfefnvl.vak.rledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                            + + l++tg+rL kfA++lg++f+f++l +   + +d+   + +L++ p+EalaVn+vl lhrll+++       + +L+ +k l+Pk
  WALNUT_00002149-RA 223 ---DLNILHKTGDRLLKFAQSLGLRFQFHPLlL-LgNSNDVpaFPPALALLPEEALAVNCVLYLHRLLRDDSRGL---RLFLHKIKALNPK 306
                         ...9**************************952.3355555334789*********************6655544...59*********** PP

                GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                         vv+++e+ea+hn++ F++rf+eal++y+a+fdslea+lp++s+er++vE++++grei+++va+eg++rrerhe++e+W+ +l+++GF++vp
  WALNUT_00002149-RA 307 VVTIAEREANHNHPLFVQRFVEALDHYTAVFDSLEATLPPNSRERVTVEQVWFGREIMDIVAAEGNNRRERHEKYESWEVMLRSSGFSNVP 397
                         ******************************************************************************************* PP

                GRAS 329 lsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         ls +a +qaklllr ++ s+gy+++ +++sl+lgW++r+L+svS+W+
  WALNUT_00002149-RA 398 LSPFALSQAKLLLRLHYpSEGYQLQIRNDSLFLGWRNRALFSVSSWQ 444
                         **********************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.31819423IPR005202Transcription factor GRAS
PfamPF035142.7E-12545444IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MASLNSSNHD QQEEDPGTDL QYNHQIIPEP SREGFTSAVS NATHMRQLLT RCAELISRSD  60
FSAAHRLVSI LSGNSSPYGD SIERLVHQFA KALSLRLKNC CYAAAAAATT TTSAASASII  120
MASTPTTAAA TALTNDRNNV DMTEPEEHLQ SCYLSLNQIT PFVRFSHLTA NQAILEAIDE  180
GQKAIHILDF DIMNGLQWPP LMQALAERSY PPPMLRITAT GHDLNILHKT GDRLLKFAQS  240
LGLRFQFHPL LLLGNSNDVP AFPPALALLP EEALAVNCVL YLHRLLRDDS RGLRLFLHKI  300
KALNPKVVTI AEREANHNHP LFVQRFVEAL DHYTAVFDSL EATLPPNSRE RVTVEQVWFG  360
REIMDIVAAE GNNRRERHEK YESWEVMLRS SGFSNVPLSP FALSQAKLLL RLHYPSEGYQ  420
LQIRNDSLFL GWRNRALFSV SSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-675144325378Protein SCARECROW
5b3h_A8e-685144324377Protein SCARECROW
5b3h_D8e-685144324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822504.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-137SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A2I4ESY50.0A0A2I4ESY5_JUGRE; scarecrow-like protein 18
STRINGcassava4.1_022846m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-123GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]