PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00001933-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22450.8 Da PI: 6.7884 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 1e-20 | 21 | 69 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrdp gk++r++lg+f+taeeAa+a++aa+++++g WALNUT_00001933-RA 21 FRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAALEFRG 69 8*******.**********8...557************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.20E-19 | 20 | 79 | No hit | No description |
PROSITE profile | PS51032 | 24.54 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-39 | 20 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-14 | 20 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 21 | 32 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 21 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 21 | 78 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MAPRNGSDIV YQDSDSKEIR FRGVRKRPWG RYAAEIRDPG KKTRVWLGTF DTAEEAARAY 60 DAAALEFRGV KAKTNFPNTC SDLTSLNNNS TTRSPSQSST VDSSSTTPQP LDLTLGGSAQ 120 YPVGPTVAFP VVTAVRPIYF FNAFANMSGN HRDLCRFDRA ETDFLRTVGS GAHSDSDSSS 180 VVDFHQPSTQ RLLDLDLNLP PPEVA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-21 | 20 | 78 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018823214.1 | 1e-150 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2I4EUY5 | 1e-149 | A0A2I4EUY5_JUGRE; ethylene-responsive transcription factor 4-like | ||||
STRING | Solyc10g009110.1.1 | 8e-54 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15210.1 | 1e-26 | ethylene responsive element binding factor 4 |