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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00001748-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 712aa MW: 78664.4 Da PI: 6.5961 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3e-20 | 22 | 77 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r L+++lgL rq+k+WFqNrR+++k WALNUT_00001748-RA 22 KKRYHRHTAHQIQRLEAMFKECPHPDEKQRSLLSRELGLAPRQIKFWFQNRRTQMK 77 688999***********************************************998 PP | |||||||
2 | START | 172.5 | 2.7e-54 | 219 | 441 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 +a +a++el+++++ +ep+W+ks+ + +n +++ ++f+++++ +++ea r+sg+v+m+ lv ++d+ +W e ++ WALNUT_00001748-RA 219 IAARAMEELLRLVQTNEPLWMKSAtdgrDVLNLETYERIFPRANTnlknphSRIEATRDSGLVIMNGLALVDMFMDSH-KWVELFPaivsL 308 6889**************************************999*********************************.*******99988 PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +t+evissg g lqlm+ +lq+lsplv+ R+f+f+Ry++q ++g w+ivdvS d +++++ s+ +++lpSg+li+ ++ng+s WALNUT_00001748-RA 309 GKTIEVISSGmlgshsGSLQLMYEDLQVLSPLVStREFYFLRYCQQIEQGLWAIVDVSYDFPREKQFSP---QCRRLPSGCLIQGMPNGYS 396 9***************************************************************98644...4556*************** PP EEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 kvtwvehv+ ++++p h l+r +v+ gla+ga +w+a l r ce+ WALNUT_00001748-RA 397 KVTWVEHVEIEDKTPtHRLYRDVVHGGLAFGAERWLAILCRMCER 441 *****************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-22 | 9 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.94E-20 | 15 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-19 | 20 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.71E-19 | 21 | 80 | No hit | No description |
Pfam | PF00046 | 9.0E-18 | 22 | 77 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 48.813 | 209 | 444 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.97E-34 | 210 | 442 | No hit | No description |
CDD | cd08875 | 2.94E-113 | 213 | 440 | No hit | No description |
SMART | SM00234 | 4.9E-44 | 218 | 441 | IPR002913 | START domain |
Pfam | PF01852 | 8.9E-47 | 219 | 441 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.9E-6 | 315 | 411 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.97E-23 | 465 | 704 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 0.001 | 470 | 551 | IPR023393 | START-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 712 aa Download sequence Send to blast |
MEYGGGEGGE DRDASSDPQG RKKRYHRHTA HQIQRLEAMF KECPHPDEKQ RSLLSRELGL 60 APRQIKFWFQ NRRTQMKAQH ERADNCDLRA ENDKIRCENI AIREALRNVI CPSCGGPPVN 120 EDSYFDEQKL RIENAHLKEE LDRVSSIAAK YIGRPISQLP PVQPIHVSSL DLSMGSFEGQ 180 GVGGPSLDID LLPGSSSTVP SLPFQPRLSD MDRSLMTDIA ARAMEELLRL VQTNEPLWMK 240 SATDGRDVLN LETYERIFPR ANTNLKNPHS RIEATRDSGL VIMNGLALVD MFMDSHKWVE 300 LFPAIVSLGK TIEVISSGML GSHSGSLQLM YEDLQVLSPL VSTREFYFLR YCQQIEQGLW 360 AIVDVSYDFP REKQFSPQCR RLPSGCLIQG MPNGYSKVTW VEHVEIEDKT PTHRLYRDVV 420 HGGLAFGAER WLAILCRMCE RFACLMVTGT STTRDLGGVI PSTDGKRSMM KLAQRMVNNF 480 CASISTSNSH RWTTLSGMNE DGVRVSVHRS TDPGQPNGVI LSAATTIWLP VSPQNVFNFF 540 KDERTRAQWD VLSNGNGVQE VAHIANGSHP GNCISVLRAF NTSQNNMLIL QESCIDSSGA 600 LVVYCPVDLP AINIAMSGED PSYIPLLPSG FAISPDGRPD LLPADGASTS SSSQHGGTMM 660 SRFGGSLITV AFQILVSSLP SAKLNLESVT TVNNLIGSTV QQIKAALNCP GS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018823334.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A2I4EVB3 | 0.0 | A0A2I4EVB3_JUGRE; homeobox-leucine zipper protein HDG11-like | ||||
STRING | XP_008240378.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |