PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001407-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YA
Protein Properties Length: 341aa    MW: 37223.8 Da    PI: 9.5572
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001407-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.3e-32170226158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh hA+rR+Rg+gGrF
  WALNUT_00001407-RA 170 EEPVYVNAKQYHGILRRRQSRAKAELEKKM-IKVRKPYLHESRHLHAMRRARGCGGRF 226
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.5E-37168229IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.093169229IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-27171226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-24172194IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860174194IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.7E-24203226IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMPAKPGNED GRLEHGGQTV LQSATYSQPW WRGVGSNVSL GDNASKSTSM EHLNVSVGNG  60
AMQLKVNGPL DDGAKFNKET RGTVASKSDG NIGKEHRDNN RVPSLTPKMV EHLDPNSQME  120
LVGHSIVLTS YPYSDQQYGG MFASYGPQAM IPELYGMHHA RMPLPLEMEE EPVYVNAKQY  180
HGILRRRQSR AKAELEKKMI KVRKPYLHES RHLHAMRRAR GCGGRFLNTK KLDNLSDPPS  240
EEGMNMGAKP SMGPTISSGS KCFFNNGNGN SGSSLNQHKG SLPIVHNTHG AHCFSKGNSS  300
SNGLSSTYHS LFSDGKEVDC LGQQRESMQV NGVAHGALPI K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-21170238272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816778.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_018816786.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLA0A2I4EBK90.0A0A2I4EBK9_JUGRE; nuclear transcription factor Y subunit A-1-like isoform X1
STRINGXP_008231270.11e-128(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.34e-42nuclear factor Y, subunit A1