PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001339-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 354aa    MW: 40872.9 Da    PI: 9.4027
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001339-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.41.4e-162666343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i  +  r +tf kR+ g++KKA+E S+LC+ + ++ii++++
  WALNUT_00001339-RA 26 IRKEKSRITTFQKRKRGLMKKAYEFSTLCGSDTCMIIYGPK 66
                        66678899*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-161677IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.2641667IPR002100Transcription factor, MADS-box
CDDcd002661.14E-211786No hitNo description
SuperFamilySSF554551.16E-1917113IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-101838IPR002100Transcription factor, MADS-box
PfamPF003197.3E-172666IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-103853IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-105374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDSSPKHILN LFVQKMGRGK LTMELIRKEK SRITTFQKRK RGLMKKAYEF STLCGSDTCM  60
IIYGPKSGDR ELELGTWPQD RAEVDRIINK YKTDSTLKRA RGAFDLSDFF VDRNKRVEVE  120
IKKLRKNILK AKYPTWDDRI ELLTEDQLRL LLDVMDAKIE GVGLRINMMK GNQNMMEKAT  180
TSRLVAGGRN GPQPEVIRSH FNSMQALYQD QMSKSPLNPL ETQWTTPQFQ NDHQGSQMLI  240
PFDPSLGDNS FMRLLHGTQD HWTQLGAGSA SQTHAPLNDL SNYNMMSGVL DNMIWNNPGA  300
PMNYNDLMIT RQLTPHHILQ CPTMPNLNYS HVHNFQVNEL YDIHEFDMKN KHLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018816713.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A2I4EBE10.0A0A2I4EBE1_JUGRE; agamous-like MADS-box protein AGL80
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-25M-type_MADS family protein