PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000724-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRF
Protein Properties Length: 369aa    MW: 42036.9 Da    PI: 8.8423
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000724-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.94.9e-2578121144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e
  WALNUT_00000724-RA  78 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 121
                         79***************************************997 PP
2QLQ58.42.1e-20943236
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                        aFTa+Q+q+L++Q+l++Ky+a++ P+Pp+Ll+ i+
  WALNUT_00000724-RA  9 AFTASQWQELEHQALIFKYMASGIPIPPDLLLTIK 43
                        7******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.3E-11844IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-15942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.542944IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.15678122IPR014977WRC domain
PfamPF088796.5E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MLSGRNRFAF TASQWQELEH QALIFKYMAS GIPIPPDLLL TIKRSCFDSP LSSKLFSHQP  60
HQHIGWNYLQ MGLGRKIDPE PGRCRRTDGK KWRCSKEAFP DSKYCERHMH RGKNRSRKPV  120
EVMKAITSTA TITNLSSPTI SSKNHSALTP TAHDSLSSLS AMSSETHHHL HNSYYDAHLH  180
QPFIHNPTSS SRLIGLSPPN NSLYVMEPAS YSQITNTDYR YNINGLKEEV DEHAFFSESS  240
GSMRSLSGPS MDDSWQLTPL TMSTSSKQRS SSGFSDSAKR PEQDRHSFVL DSAVKKDEMR  300
MPIQEEKEQP QKTIHRFFDE WPPKERDSWL DLDDKPLNSS SPSTTRLSIS IPNSFHDFPI  360
FNSRTHNGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098462e-50AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844338.10.0PREDICTED: growth-regulating factor 1 isoform X2
TrEMBLA0A2I4GKB50.0A0A2I4GKB5_JUGRE; growth-regulating factor 1 isoform X2
STRINGEOY302871e-144(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-52growth-regulating factor 5