PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000695-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 577aa    MW: 64389.7 Da    PI: 6.1438
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000695-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4271.5e-1302075771374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++ A+a+s++ + + ++l+++ +  +s +g+p+qRl ay+ e+L ar   s++++y+al+++e +   s++ l+++++++e++P+l
  WALNUT_00000695-RA 207 LKQLLIASAKALSENRMDNFDKLVEKARGAVSITGEPIQRLGAYMIEGLVARKEASGTNIYRALRCREPE---SKDLLSYMHILYEICPYL 294
                         679******************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf++++aN aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s+  + + le++g+rLa + e++++p+ef+ 
  WALNUT_00000695-RA 295 KFGYMAANGAIADACRNEDRIHIIDFQIAQGAQWMTLLQALAARPRGPPHVRITGIDDPVSKyaRGDGLEAVGRRLAAISEKFNIPVEFHG 385
                         ***********************************************************999999************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v     d+++e+L+v+pgEalaVn+ lqlh+++desv+++++rde+L++vkslsPkvv++veqe+++n+++F++rf+e+l++y a+f+s+
  WALNUT_00000695-RA 386 -VPVFAPDVTPEMLNVRPGEALAVNFPLQLHHTPDESVDVNNPRDELLRMVKSLSPKVVTLVEQESNTNTTPFFHRFVETLDFYLAMFESI 475
                         .688899************************************************************************************ PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpr+s++r++vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF ++pls+++++ + +llr ++ + y++ e++g+++lgW
  WALNUT_00000695-RA 476 DVTLPRNSKDRVNVEQQCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFCQYPLSSYVNSVIGTLLRCYS-EHYTLVERDGAMLLGW 565
                         **********************************************************************9999.66************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         kdr+L+s+SaW+
  WALNUT_00000695-RA 566 KDRNLISASAWQ 577
                         ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.389181558IPR005202Transcription factor GRAS
PfamPF035145.2E-128207577IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MDSHQLFGLG VTGAGLSFTS SYPAVPSIPN RRLGSLKFDL GNSPDSPFLT QFDTDSLTNL  60
SESQEQHSST ENLSGVSPSC NSSLETSSYY HQLNPSLDRL REDHKLYPST PASFIQDANC  120
SQNIRHALLE LETALMGPDD DEATAREVSR PDRRSRSWSL ESRGVHASQS QLSFVSGHMQ  180
SDEVVHVEKR HKAMDEASLP SFSPGSLKQL LIASAKALSE NRMDNFDKLV EKARGAVSIT  240
GEPIQRLGAY MIEGLVARKE ASGTNIYRAL RCREPESKDL LSYMHILYEI CPYLKFGYMA  300
ANGAIADACR NEDRIHIIDF QIAQGAQWMT LLQALAARPR GPPHVRITGI DDPVSKYARG  360
DGLEAVGRRL AAISEKFNIP VEFHGVPVFA PDVTPEMLNV RPGEALAVNF PLQLHHTPDE  420
SVDVNNPRDE LLRMVKSLSP KVVTLVEQES NTNTTPFFHR FVETLDFYLA MFESIDVTLP  480
RNSKDRVNVE QQCLARDIVN IIACEGKERV ERHELFGKWK SRLTMAGFCQ YPLSSYVNSV  540
IGTLLRCYSE HYTLVERDGA MLLGWKDRNL ISASAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6221557627378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852274.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
RefseqXP_018852283.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2I4H8160.0A0A2I4H816_JUGRE; chitin-inducible gibberellin-responsive protein 1-like
STRINGXP_004294325.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-179GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]