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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00000575-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 180aa MW: 20660.4 Da PI: 7.2946 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.5e-18 | 19 | 70 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++q++ Le+ F +++++ e++ +LA++lg++ rqV +W+qN+Ra++k WALNUT_00000575-RA 19 KRLNPDQVKLLERSFTSSNKLEPERKLQLANQLGVPPRQVAIWYQNKRARWK 70 56899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 109.3 | 2.8e-35 | 17 | 108 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k+rl+ +qvklLE+sF++++kLeperK +la++Lg+ prqva+W+qn+RAR+kt+ lE dy++L++++++ e++ Lek+ve+L+ el+ WALNUT_00000575-RA 17 MKKRLNPDQVKLLERSFTSSNKLEPERKLQLANQLGVPPRQVAIWYQNKRARWKTQSLELDYNVLQQKLENALFEKRLLEKDVERLKGELE 107 59*************************************************************************************9998 PP HD-ZIP_I/II 93 e 93 + WALNUT_00000575-RA 108 K 108 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.597 | 12 | 72 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-17 | 14 | 82 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.1E-14 | 14 | 76 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.1E-15 | 18 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.90E-13 | 18 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-18 | 19 | 79 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.4E-5 | 43 | 52 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 47 | 70 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.4E-5 | 52 | 68 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MDFFRSQNQK HTPKHNMKKR LNPDQVKLLE RSFTSSNKLE PERKLQLANQ LGVPPRQVAI 60 WYQNKRARWK TQSLELDYNV LQQKLENALF EKRLLEKDVE RLKGELEKAQ EMVIALKQTG 120 GTDQVCCNSV SFEEAATRSS SLKEGVNCSA ENSKGEDQEV FPVLEDLYAC LIGVDGSSWD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018847117.1 | 1e-132 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A2I4GT94 | 1e-130 | A0A2I4GT94_JUGRE; homeobox-leucine zipper protein ATHB-52-like | ||||
STRING | XP_008226425.1 | 4e-61 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 1e-33 | homeobox protein 52 |