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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00000297-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | CPP | ||||||||
Protein Properties | Length: 803aa MW: 87578.7 Da PI: 5.1836 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.6 | 3.2e-15 | 507 | 546 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+skClk+YCeCfaag +C +C Ce C+Nk e WALNUT_00000297-RA 507 DCKRCNCKRSKCLKLYCECFAAGIYCVGSCACETCFNKPE 546 689**********************************976 PP | |||||||
2 | TCR | 50.5 | 4e-16 | 594 | 632 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkkskClkkYCeC++a++ Cs+ C+C++C+N+ WALNUT_00000297-RA 594 RHKRGCNCKKSKCLKKYCECYQAKVGCSDGCRCDGCQNS 632 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.0E-14 | 506 | 547 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.637 | 507 | 634 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.3E-11 | 509 | 544 | IPR005172 | CRC domain |
SMART | SM01114 | 9.8E-17 | 594 | 635 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-11 | 596 | 632 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence Send to blast |
MDSPEGNPVA ASSSPISSDS PPVQESPFFN YLCNLSPIKS VKAERYTQRF TETNLPTPPL 60 VFTSPRIDLQ RDTSFLERDN VAATDSIVHE NFNTQLNVVH IPSFEKEGQS CSPAGCIDEY 120 LVDPMEVDST NSTHLGLQSA EEVPELLQSG YAGLKGTIKK VDDAVDSNRE EGALTLCDPA 180 EKNLNLSPLK LVESAVDLRN DERFDDFLKG LTSEKAKDIV DADMKLNPVS GVQHCERHAA 240 QIEGVQQDEG DGTCQSLDEP LQINEACEDF DDGSRTLPKE FVKGANNCRG TRRHLHFEAT 300 LACKSIATGN TANPKASITN LKSLAPISSS WDAAGYPLSI TSQASCCPLK VARSTQNIGN 360 SEILSPLPTG IGLHVNSIGR SMLSGSDVFT SKNLNLSSQD KLVPEWSNDL VKDPNNISNS 420 AIAGTMFSHA DLDQQESQAG VAASSTSYPI NSLNPPCDSP LTQIELQVAP CEGRISAQQN 480 ADSIDELNQM SPKRKRKSTA NKSESGDCKR CNCKRSKCLK LYCECFAAGI YCVGSCACET 540 CFNKPEYEDL VLDTREQIES RNPLAFAPKI VKQTTESPAN VMEEGNWTTP SSARHKRGCN 600 CKKSKCLKKY CECYQAKVGC SDGCRCDGCQ NSFGIKSDYR RAERCDNLSH EKLQIAESEK 660 NGSSKQFSPT SWEGLADMRN LDPCSEISQA QLQLASNIQS SAASLHWRYS PVTLTPKLCG 720 GNGPHELTSD SAFCNMEDND MLEILKDTTN THRAEGQRSS SPRGLRCGRK FILQAVPSFP 780 PLTPYKTVSS KLKNDQTDSA ANR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-17 | 509 | 631 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-17 | 509 | 631 | 12 | 120 | Protein lin-54 homolog |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 491 | 497 | PKRKRKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018827589.1 | 0.0 | PREDICTED: uncharacterized protein LOC108996265 | ||||
Refseq | XP_018827590.1 | 0.0 | PREDICTED: uncharacterized protein LOC108996265 | ||||
TrEMBL | A0A2I4F7G6 | 0.0 | A0A2I4F7G6_JUGRE; uncharacterized protein LOC108996265 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14277 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 9e-60 | TESMIN/TSO1-like CXC 2 |