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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00000070-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 152aa MW: 17448.2 Da PI: 6.8193 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.2 | 6.6e-21 | 23 | 74 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps g +r +lg+f+taeeAa+a+++a+ +l+g+ WALNUT_00000070-RA 23 RYRGVRRRP-WGKFAAEIRDPSRHG--ARLWLGTFDTAEEAARAYDRAAFNLRGH 74 6********.**********96544..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.89E-24 | 23 | 82 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.119 | 23 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-38 | 23 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-32 | 23 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.40E-28 | 23 | 82 | No hit | No description |
Pfam | PF00847 | 1.7E-15 | 23 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-12 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-12 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MEEPRKGKEE KREKEEKGRE EVRYRGVRRR PWGKFAAEIR DPSRHGARLW LGTFDTAEEA 60 ARAYDRAAFN LRGHLAILNF PNEYYPQVAG FPPHPPQFSS STSSSAPSGS TSERGSSSTG 120 QQRPVFEFEY LDDQVLEDLL ESEEEKRKRT QG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-35 | 18 | 135 | 9 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018841520.1 | 1e-107 | PREDICTED: ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 3e-54 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2I4GCD9 | 1e-105 | A0A2I4GCD9_JUGRE; ethylene-responsive transcription factor ERF098 | ||||
STRING | XP_008224367.1 | 2e-66 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-37 | ERF family protein |
Publications ? help Back to Top | |||
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