PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011181
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 160aa    MW: 18551.2 Da    PI: 10.0353
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45808503PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.5e-281059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +++fsstgkly+y+s
  Vun011181 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYAS 59
               8***********************************************86 PP
2K-box80.34.7e-2781156984
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                + +++++ +q+e+a L+++++ Lq+ +R+l+Ge+L+ L +keLq+Le+qLe slk +R kK+++l+++i+el++k 
  Vun011181  81 NPASEEKFWQTEAASLRQQLQYLQECHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKG 156
                4567899*******************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.085161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.22E-44277No hitNo description
SuperFamilySSF554552.49E-33290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-2383157IPR002487Transcription factor, K-box
PROSITE profilePS5129713.46386160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLMVFSS TGKLYDYAST  60
SMKSVFERYN KLKEEHHHLM NPASEEKFWQ TEAASLRQQL QYLQECHRQL MGEELTGLGI  120
KELQNLENQL EMSLKGVRMK KDQILTSEIK ELRQKGNLIX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-24181181MEF2C
5f28_B9e-24181181MEF2C
5f28_C9e-24181181MEF2C
5f28_D9e-24181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518486.11e-113MADS-box transcription factor 23-like isoform X1
RefseqXP_022642753.11e-113MADS-box transcription factor 23-like isoform X1
RefseqXP_022642754.11e-113MADS-box transcription factor 23-like isoform X2
RefseqXP_027931828.11e-113MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP491e-81MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S3VJF21e-112A0A1S3VJF2_VIGRR; MADS-box transcription factor 23-like isoform X1
TrEMBLA0A3Q0FJ961e-112A0A3Q0FJ96_VIGRR; MADS-box transcription factor 23-like isoform X2
STRINGGLYMA13G32810.11e-109(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-83AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]