PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011033
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 167aa    MW: 18267.9 Da    PI: 8.2208
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S50218704PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.43.8e-272103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ C+l+ ++     +++q++++ +++k+FG++ ++++++++p+++r+++++sl++e++ r+ +Pv+Gavg++ +++++++++++e++
  Vun011033   2 SCNGCRVLRKGCSETCPLRSCLqwiesAESQRHATLFLAKFFGRTDLISFIASVPQTTRPALFQSLLFEGCGRTVNPVNGAVGLLCSGNWHVCEAAVETV 101
                6*********************9999777889****************************************************************9998 PP

     DUF260  96 ll 97 
                l+
  Vun011033 102 LA 103
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.21107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-222101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCPLR SCLQWIESAE SQRHATLFLA KFFGRTDLIS FIASVPQTTR  60
PALFQSLLFE GCGRTVNPVN GAVGLLCSGN WHVCEAAVET VLAGGVLRAP PDTVAGASTD  120
TRRPFRPLRL EHDANENSSR SLMNGAEEPE TVRYGSHKKN QILNLFM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027941565.11e-121LOB domain-containing protein 39-like isoform X1
SwissprotQ9SZE82e-59LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A4D6MEY41e-119A0A4D6MEY4_VIGUN; Lateral organ boundary
STRINGGLYMA17G35440.18e-88(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.19e-62LOB domain-containing protein 39