PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun010679

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 181aa MW: 19549.1 Da PI: 7.0925

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45787506	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	37.6	6.2e-12	1	45	53	97
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e++l+ Vun010679 1 QRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLR 45 699************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.618	1	49	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-8	1	43	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
QRPALFQSLL FEACGRTVNP VNGAVGLLWT GNWHVCQAAV ETVLRGGTVR PVPELLGLDA 60 PTPDDASEGE VTCNDKWRVQ DPNPSFRLPA AMSDKAASGG KRKRLEELSK LQTATTDLNL 120 RLKPSFLQNA ASFGCRQEIR WPRSPSINSE ESGTTTAACL ESGIGDLYAP DGGRKVLNLF 180 I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027914802.1	1e-129	LOB domain-containing protein 37-like
Swissprot	Q9FN11	7e-40	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A4D6LR22	1e-128	A0A4D6LR22_VIGUN; Lateral organ boundary
STRING	XP_007156728.1	1e-117	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-42	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]