PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Publication

Basic Information? help Back to Top

TF ID

Vun010273

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 197aa MW: 21702.8 Da PI: 8.7459

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-17062	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.8	9e-44	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk++rrkC+++Cv+apyfp ++p++fa+vhk+FGasnv kll++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql++el+++k+e Vun010273 11 PCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQLQTELHHAKKE 110 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.833	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.5E-44	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MSSSLSSTNS PCAACKIQRR KCTQECVFAP YFPPDNPQRF AYVHKVFGAS NVAKLLNELN 60 AAQREDAVKS LAYEAEARLR DPVYGCVGLI SILQHRLKQL QTELHHAKKE LASYIGPHAM 120 LPPPPPPPPQ PRTFSLFPFK TAPPPPHQDL FAFTDDGASA SHSSHAFPHA PTHPLALPHH 180 QHLMLSPMQS KPQTDPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-47	7	114	7	114	LOB family transfactor Ramosa2.1
5ly0_B	9e-47	7	114	7	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027902572.1	1e-116	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	4e-66	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A4D6NT86	1e-114	A0A4D6NT86_VIGUN; Carbamoyl-phosphate synthase large subunit
STRING	XP_007136211.1	1e-114	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-66	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]