PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun009943
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 212aa    MW: 23603.2 Da    PI: 9.737
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45831659PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.58.2e-3276132158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R R sgGrF
  Vun009943  76 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALKRVRESGGRF 132
                57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.4E-3574135IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.91175135IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-2778132IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.4E-2478100IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686080100IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.4E-24109132IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKPFFLSNHP DPTMYNCSQV DFSHSMAHTP YPCGDPYFGS SIVAYGPQAI NQPQMIPQMV  60
GLASTRIALP VELAEDGPIY VNAKQYHGIL RRRQSRAKLE AQNKLIKSRK PYLHESRHRH  120
ALKRVRESGG RFLSAKQLQE SNAEHVDNNS HSRQKKDASS EVESHNSRTA ENACITFTAI  180
SGLTTMSSNS LNFSSPNTTS WGTLYMGGSS QX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-2278137463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116125RHRHALKRVR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154608.11e-123hypothetical protein PHAVU_003G133100g
SwissprotQ93ZH25e-40NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A4D6L0591e-143A0A4D6L059_VIGUN; Nuclear transcription factor Y
STRINGXP_007154608.11e-122(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-42nuclear factor Y, subunit A3