PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun008703
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 257aa    MW: 28647.9 Da    PI: 5.9837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-13635PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-12107153455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Vun008703 107 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 153
                799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.259103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.37E-13106157No hitNo description
SuperFamilySSF474596.15E-18106172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-18107172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9107153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048739.99E-6187254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
XTKSQSITIS FSPKVEDDPG FTSDSFEVQA LGVNHAYGNS SNGTLGDSSE GKMFPQLNQM  60
MGGNFNAQAR VPCLDLGNED TSSIHADERK PRKRGRKPAN GREEPLNHVE AERQRREKLN  120
QRFYALRAVV PNISKMDKAS LLGDAITFIT DLQMKIKVLE AEKNMINNKD QRLSLPDMDF  180
QEREDDTVVT VRCPLDTHPV SDVVKTFREH QIVAQDTNVS TTDDKIIHTF SIRTEGGEAA  240
AIQLKEKLEA ALSKNCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-30101175276Transcription factor MYC2
5gnj_B1e-30101175276Transcription factor MYC2
5gnj_E1e-30101175276Transcription factor MYC2
5gnj_F1e-30101175276Transcription factor MYC2
5gnj_G1e-30101175276Transcription factor MYC2
5gnj_I1e-30101175276Transcription factor MYC2
5gnj_M1e-30101175276Transcription factor MYC2
5gnj_N1e-30101175276Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027912605.10.0transcription factor bHLH3-like
SwissprotA0A3Q7H2162e-91MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A0S3SRS10.0A0A0S3SRS1_PHAAN; Uncharacterized protein
STRINGXP_007144718.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.15e-82bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]