PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Vun008537

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 264aa MW: 29235 Da PI: 9.9587

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-22659	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.5	5.8e-14	78	124	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L ++e++k+L Vun008537 78 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIEHVKDL 124 79***********************8.....7**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.402	75	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	78	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-15	78	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.14E-9	78	127	No hit	No description
SuperFamily	SSF47459	5.76E-13	78	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-11	81	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00481	171	206	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
PLFTLVRGRV SDMRKYLCRN CEGRRMITAL SPGGAHVPAR IIVVLQVTDS ASLQFGEFHS 60 WPLPIEGAAE DRAMSASKSH SQAEKRRRDR INAQLATLRK LIPKSDKMDK AALLGSVIEH 120 VKDLKRKAMD VSRAFTVPTE IDEVSIDCDH VEDESCTKVN KLKENIVIKA SVCCDDRPEL 180 FPELIQVLKG LRLTAVKADI ASVGGRIKSK LVLCSKDSEE GVCLTTLKQS LKSAVTKIAS 240 SSMTSNCPTR SKRQRFFLPS RCLQ

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027914056.1	1e-156	transcription factor bHLH51-like
Swissprot	Q9XEF0	8e-46	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A4D6MB23	1e-155	A0A4D6MB23_VIGUN; Transcription factor MYC2
STRING	XP_007163561.1	1e-152	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	3e-48	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]