PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun008018

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ZF-HD

Protein Properties

Length: 293aa MW: 31843.1 Da PI: 6.5532

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-10690	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	97.4	1.1e-30	56	111	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eC+kNhA+s+GghavDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + Vun008018 56 TVRYRECQKNHAVSIGGHAVDGCCEFLAA-GEEGTLEAVICAACNCHRNFHRKEIDG 111 79************************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	8.0E-22	42	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.8E-28	57	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.3E-26	58	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.997	59	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.84E-20	194	265	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-32	199	267	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.5E-25	207	263	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
EEEEEEEDEE EEEMGFSVAA PGYDSFGNMA ARSKISAAEG VPATVNSGRK GSSTGTVRYR 60 ECQKNHAVSI GGHAVDGCCE FLAAGEEGTL EAVICAACNC HRNFHRKEID GEISPYQLRS 120 QPQPQPLHPQ YHHQFSPYYH RGPPPSSAGY LHHHLLTPPV SQHRPLALPP LASGGVFSRE 180 EEDMSNPSSS GGGGGGGFGG GSGSGTKKRF RTKFTQEQKD KMLAFAEKLG WRIQKHDEAA 240 VEQFCAETCV KRHVLKVWMH NNKHTLANSE QRSAGNGSNH LNSSTMIANS ELS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-28	206	269	16	79	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	201	SGGGGGGGFGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027901673.1	0.0	zinc-finger homeodomain protein 2-like
Swissprot	A2Z259	2e-75	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	1e-75	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A4D6NTX4	0.0	A0A4D6NTX4_VIGUN; Uncharacterized protein
STRING	XP_007136351.1	1e-177	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-63	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]