PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun007948

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 300aa MW: 32600.6 Da PI: 7.6434

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-31446	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.1	2.1e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e + Vun007948 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENV 103 6***********************************************************************************************9998 PP DUF260 96 llke 99 l ++ Vun007948 104 LKGA 107 8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	4.5E-98	1	300	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.889	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV ENVLKGAPIT PITSEAAASG 120 RGPPLKAYDI RHVSRDENSA ASNETQQQRV KTRSRVRRPV VNAKPISTTN EXNGSKGTEL 180 GSSEPGLMTC EWTEEALNRS GSHESSLSHQ SEAANAVESE SMVSVETAET SILFRDEPDS 240 NPKIVQRTDD VGLELTLGFE PVSRAQHVVP VKKRRIELKD FSGSAESGSC KMELGLECSA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027929983.1	0.0	LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-108	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A4D6NIY2	0.0	A0A4D6NIY2_VIGUN; Uncharacterized protein
STRING	XP_007139150.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-103	LOB domain-containing protein 41