PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun007852
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 309aa    MW: 33636.5 Da    PI: 4.6504
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-17588PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-10140162426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                e C f+++tG Ck+G +CkF+H+
  Vun007852 140 EDCAFYMKTGNCKFGFNCKFNHP 162
                89********************8 PP
2zf-CCCH309.1e-10186208325
                S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                t +C++++r+G Ck+G +Ck++H
  Vun007852 186 TTECKYYQRSGGCKFGKSCKYNH 208
                889******************** PP
3zf-CCCH42.31.2e-13235259226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C++++rtG Ck+G++CkF+H+
  Vun007852 235 GERECPYYMRTGSCKFGANCKFNHP 259
                789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.67E-6135164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211136164IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4136163IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8140162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4142161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389183211IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-5183210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6185213IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7186208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5186210IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6233260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77233261IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-11235259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6236261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5239258IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEGSESDSAP LSISNGEDPQ LGASSPPPSP PPQPSDLNHA AEHEILSGEL HSKLDLKGED  60
ETEDKVSDLN DRGGVCDEET AKGDADSRGS ETNSWDEELG VDADEDGVGI GDVHGDDGEE  120
HREERNSDVT HHYPLRPEAE DCAFYMKTGN CKFGFNCKFN HPIRRKTQAV REKAGEREES  180
TDRSSTTECK YYQRSGGCKF GKSCKYNHTR GKISTTPAPV PVFELNFLGL PIRQGERECP  240
YYMRTGSCKF GANCKFNHPD PTVGGCDPPS GFGNGGPMSL QGVSRPSVPS WSSPRSLNEA  300
SPFVPMMLX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027919607.10.0zinc finger CCCH domain-containing protein 43-like
TrEMBLA0A4D6KTE60.0A0A4D6KTE6_VIGUN; Serine/threonine-protein kinase/endoribonuclease IRE1
STRINGXP_007155512.11e-173(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.15e-60C3H family protein