PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun007793
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 315aa    MW: 35637.9 Da    PI: 9.1539
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-7690PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06112132526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C+ ++r G+C+ Gd C F+Hg
  Vun007793 112 VCPEYRR-GQCSSGDACEFSHG 132
                7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.3E-5107133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.324108134IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-5112132IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287142166IPR000571Zinc finger, CCCH-type
SMARTSM003562.4142165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
HKFQLQPSHH LLSLKKSLKX IXIPPRKLLT RRSAADMFSD DTLLHKYLPH IDSDDSDDVG  60
DPYASDEFRM FEFKVRRCTR SRSHDWTDCP GAHPGEKARG RDPRRFHYSG TVCPEYRRGQ  120
CSSGDACEFS HGVFECWLHP SRYRTEACKD GKNCKRKVCF FAHTPRQLRV LPPQDSNKKK  180
KCSNMSPHNH NNNNNNITIV VCSVIVHPLV HQLLPCLACL IFSPPLSPSS SSSSPSSVSA  240
SKPHTLSWLD VSEDHKQFNV HSPTTATCGS FCNGNGRFLR EESGSFSMNG NGKIFEGRKW  300
GLLMMSLSQI WPGFK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432211.11e-139PREDICTED: zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A0L9V5I31e-138A0A0L9V5I3_PHAAN; Uncharacterized protein
STRINGXP_007132795.11e-117(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-64C3H family protein