PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun006135 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ZF-HD | ||||||||||||
Protein Properties | Length: 157aa MW: 17178.2 Da PI: 9.3034 | ||||||||||||
Description | ZF-HD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 85.4 | 6.2e-27 | 10 | 58 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k +Y+eCl+NhAaslG++a+DGCgEf+ + +l+CaACgCHRnFHR+ + Vun006135 10 KSVYRECLRNHAASLGSYATDGCGEFTVD------GGGLQCAACGCHRNFHRKVK 58 568************************98......458**************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.3E-22 | 12 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.213 | 13 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.7E-21 | 13 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-16 | 13 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.36E-15 | 66 | 136 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 70 | 138 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-27 | 78 | 136 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MEGGSGEKWK SVYRECLRNH AASLGSYATD GCGEFTVDGG GLQCAACGCH RNFHRKVKYP 60 VGPESPGGMD YGGEGGSKKR FRSKFSTDQK EKMLAFAEKL GWKLQRKDLD DEIERFCRSI 120 GVSRQVFKVW MHNHKNSSSS SSASASASTG NISSLTH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-23 | 77 | 141 | 16 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027921541.1 | 1e-114 | zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9SB61 | 6e-41 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A4D6LAL3 | 1e-113 | A0A4D6LAL3_VIGUN; Uncharacterized protein | ||||
STRING | XP_007160565.1 | 1e-102 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-42 | homeobox protein 22 |
Publications ? help Back to Top | |||
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