 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vun005231 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
C3H |
| Protein Properties |
Length: 194aa MW: 21394.9 Da PI: 6.1036 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Vun#S45804368 | PU_unref | Unigene | View CDS |
| PUT-167a-Vigna_unguiculata-28746 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 17.9 | 5.7e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k++lC+ffa G C G+ C ++H+
Vun005231 3 KRVLCKFFAH-GACLKGEHCEYSHD 26
99****6666.*************5 PP
|
| 2 | zf-CCCH | 27.4 | 6e-09 | 34 | 53 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25
+C f+++ G C yG+rC++ H
Vun005231 34 ICTFYQK-GVCAYGSRCRYDH 53
7******.************* PP
|
| 3 | zf-CCCH | 19.5 | 1.7e-06 | 146 | 166 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C+ fa+ G C++G++C+ +Hg
Vun005231 146 ICS-FAAAGNCPRGEKCPHIHG 166
677.**************9998 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 3.4E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.615 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.38 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0024 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.55E-6 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.3E-6 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.389 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.011 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 146 | 166 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 194 aa
Download sequence Send
to blast |
MSKRVLCKFF AHGACLKGEH CEYSHDWKDP PNNICTFYQK GVCAYGSRCR YDHIKASQAQ 60
SSIPSSSVIE NHTVVSDTGA FGNIITTSNG VGTTAELSLS SSPYILPSEP AWNHELVWNP 120
EIEYYEILGE DNVGQSIITS PSEISICSFA AAGNCPRGEK CPHIHGDLCP TCGKHCLHPF 180
RPEEREEHMK TCES
|
