PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Vun005022

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 202aa MW: 23277.1 Da PI: 9.7877

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45827163	PU_ref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-12533	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.3e-09	28	78	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksL 54 + +Er+RR +++s ++L +l+P++ k+p+ K l + L +A +YIk++ Vun005022 28 KTIERNRRIHMKSLCHQLGSLIPPNLKPPKSKlmLGQQDQLDLAARYIKHM 78 689*******************6678888867888899********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.19E-4	20	83	No hit	No description
PROSITE profile	PS50888	9.89	22	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-9	26	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-9	26	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	28	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0031	28	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
VYERTSESIK MKKRLASTID DSTKLDRKTI ERNRRIHMKS LCHQLGSLIP PNLKPPKSKL 60 MLGQQDQLDL AARYIKHMRE RIEKLKRQKE QAMLNQSSDR KMLDKNVDTK LPILELRDLG 120 SGIEVMLVSG LNKTFMLYEV ISVLEEEGAE VVTASFSTVG DKLFYVVHAQ VKISRVGVET 180 TRVKDRLQEF IAPLEIWPEE DV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027902510.1	1e-139	transcription factor bHLH162-like
TrEMBL	A0A4D6LDH0	1e-136	A0A4D6LDH0_VIGUN; Achaete-scute transcription factor-related
STRING	XP_007138091.1	1e-130	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	6e-26	bHLH family protein