 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vun004478 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 221aa MW: 25489.1 Da PI: 8.0685 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Vun#S45811850 | PU_unref | Unigene | View CDS |
| PUT-167a-Vigna_unguiculata-16552 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 85.8 | 2.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+ri+n++ rqvtfskRr+g++KKA+EL +LCda+v ++ifsstgklyey+s
Vun004478 9 ERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLLIFSSTGKLYEYAS 59
69***********************************************86 PP
|
| 2 | K-box | 78.2 | 2.1e-26 | 79 | 170 | 8 | 98 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+ + ea+ + +q+e++ L+++++ Lq+++R+++Ge+L Ls+++Lq Le+qLe sl+ +R kK+++l+++i+el +k + + +en +L kk+
Vun004478 79 QiNPEAEVKFWQREAEILRQQLQILQENHRQMMGEQLYGLSVRNLQDLENQLEMSLQGVRMKKEQILKDEIQELNRKGNLIFQENVELYKKV 170
2378999*********************************************************************************9986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.0E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 30.992 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.25E-43 | 2 | 77 | No hit | No description |
| SuperFamily | SSF55455 | 6.15E-33 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.7E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.4E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.7E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.7E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.6E-24 | 83 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 13.686 | 86 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 221 aa
Download sequence Send
to blast |
MGRGKIVIER IDNSTSRQVT FSKRRKGLIK KAKELAILCD AQVGLLIFSS TGKLYEYAST 60
SMKSIIERYN ACKEEQHHQI NPEAEVKFWQ REAEILRQQL QILQENHRQM MGEQLYGLSV 120
RNLQDLENQL EMSLQGVRMK KEQILKDEIQ ELNRKGNLIF QENVELYKKV YGTTDTATTS 180
RNAFVPLPFG MHAGGHPQEL VQLQLCQPEQ EAYETSDTAT K
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
