PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun004444 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||||||
Protein Properties | Length: 222aa MW: 24124.7 Da PI: 6.6427 | ||||||||||||
Description | LBD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.4 | 1e-42 | 69 | 168 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e Vun004444 69 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAE 168 7***********************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.181 | 68 | 169 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.8E-43 | 69 | 166 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDYKLKTLTT PTTSSSPPIP IHVPTMLSNS PPSSSSSPPS HSPTPFPSPS QGSPPAAPPS 60 PPPPVVVSPC AACKILRRRC VEKCVLAPYF PPTDPLKFTI AHRVFGASNI IKFLQELPES 120 QRADAVSSMV YEANARIRDP VYGCAGAICQ LQKQVSELQA QLAKAQAELV NMQCQQANLV 180 ALICMEMSES QEQHMVQPQP HIDMSCFIED NSFGTAWEPL WT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 60 | 176 | 2 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 60 | 176 | 2 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027935436.1 | 1e-161 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 8e-77 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A4D6N2F0 | 1e-160 | A0A4D6N2F0_VIGUN; Carbamoyl-phosphate synthase large subunit | ||||
STRING | GLYMA20G31780.1 | 1e-115 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-62 | LOB domain-containing protein 1 |