PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Publication

Basic Information? help Back to Top

TF ID

Vun003284

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 264aa MW: 28588.6 Da PI: 9.3661

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45804883	PU_ref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-14623	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.4	1.8e-41	69	168	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq+++l+ael+++++e Vun003284 69 PCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEAQRADAANSLVYEANLRLRDPVYGCMGAISTLQQQVQSLQAELNAIRAE 168 7**********************************************************************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.492	68	169	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-41	69	166	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
GVPVYETKIF LPPNPPLRSR KSKGMFGHQE IDRLEEITKV RAEVEASSQM GRKHFYGPTP 60 GITLNTVTPC AACKLLRRRC AEECPFSPYF SPHEPQKFVA VHKVFGASNV SKMLLEVPEA 120 QRADAANSLV YEANLRLRDP VYGCMGAIST LQQQVQSLQA ELNAIRAEIL KYKYREAASL 180 ISSNHAALVS SADAISAAIP TNSQPLGLSQ PLTPPPPKLL HTPPLKPLPS PSVILSSFSS 240 SSTSSVYTPP KSSMSLGSIS STEX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	69	180	11	122	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	69	180	11	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027939574.1	1e-171	LOB domain-containing protein 13 isoform X1
Swissprot	Q9AT61	2e-72	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A4D6MI02	1e-163	A0A4D6MI02_VIGUN; Carbamoyl-phosphate synthase large subunit
STRING	XP_007142059.1	1e-128	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	3e-74	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]