PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002684
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 291aa    MW: 32171.8 Da    PI: 10.0446
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45800317PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-34627PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.4e-32129185158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep++VNaKQy+ Il+RRq Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF
  Vun002684 129 EEPIFVNAKQYHTILRRRQYRAKLEAQNKL-IKERKPYLHESRHLHALKRARGSGGRF 185
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.0E-37127188IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.369128188IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.5E-27130185IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-23131153IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860133153IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-23162185IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
XTKPLNLQYQ DRDSSSSQST GQSYPEVGSA QSGQISVQCS NSSACSTLNT TGRKSMEGVI  60
RSSVRGQDFT FPPSQLCHNR PLAHTAFHLA EPCFSGLLAS PYGPQPNIHP AQLIGMATTR  120
IPLPLDLSEE PIFVNAKQYH TILRRRQYRA KLEAQNKLIK ERKPYLHESR HLHALKRARG  180
SGGRFLNTKK HEESKPSSQN HGLDVSSCTH LKLRGNMSES KARLNYRDGA FTTTCSDFTT  240
ASNSGDLFQQ HQPDFRLCGY PSHLGRNMQG YSADISGGRG GGNQHRLSVL M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-23129202273NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027907156.10.0nuclear transcription factor Y subunit A-3-like
RefseqXP_027907157.10.0nuclear transcription factor Y subunit A-3-like
RefseqXP_027907158.10.0nuclear transcription factor Y subunit A-3-like
TrEMBLA0A4D6MN420.0A0A4D6MN42_VIGUN; Nuclear transcription factor Y
STRINGXP_007135485.11e-170(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-56nuclear factor Y, subunit A3