PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002228
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 314aa    MW: 35122.4 Da    PI: 5.7576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45816825PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-30345PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13123174155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr l+P++   + ++ + a+i   A++++k+L+
  Vun002228 123 QRMTHIAVERNRRKQMNEYLSVLRALMPES---YVQRGDQASIIGGAINFVKELE 174
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.65E-13121178No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13121178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.148122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16122186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-9128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MALEAVVYPQ PQDPFGSAIK DLYSYNNLLE AAAAANWGYA DFTLQKEDQA SVTFCDNQTE  60
NYSYGEWNSS PPSLLPHTID ASNPPSSETS NAQNNLDSSV STPARTKRRR TKSRKNKEEI  120
ENQRMTHIAV ERNRRKQMNE YLSVLRALMP ESYVQRGDQA SIIGGAINFV KELEQRLQFL  180
GAQKEKEGKA EVPFSEFFSF PQYSTSASGG CDNSAAAMSE QKGEVQSAIA DIEVTMVETH  240
ANLKIRSKKR PKQLLKIVSS LHGMRLTILH LNVTTTEEIV LYSLNVKVEE DCKLGSVDEI  300
AAAVYQMLNR IQQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123134RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027930940.10.0transcription factor bHLH94-like
RefseqXP_027930941.10.0transcription factor bHLH94-like
SwissprotQ9C7T42e-80BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A4D6KPZ40.0A0A4D6KPZ4_VIGUN; Transcription factor MYC2
STRINGXP_007147072.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]