PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002203
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 315aa    MW: 35332.4 Da    PI: 10.0532
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45825180PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-22628PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.15.2e-32173229158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +++rkpylheSRh hA+rR+Rg+gGrF
  Vun002203 173 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IRNRKPYLHESRHLHAMRRARGNGGRF 229
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.5E-37171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.811172232IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.0E-28174229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-24175197IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.7E-24206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
XITASCSIVS DEVADLDKEK RENGSHLNAI RILKTEAFHR KICSKMPGKP DTDDYGEQIQ  60
FHPWWRAVGE NASKSSSDAQ LNGSPSLPGT DKTGGKEYQN IKHDLTSISF TMDKYLAPTP  120
HTEFVGHSVV LTSPYSDAQY GQILTTYGQQ VMINPPLYGM HQARMPLPLE MEEEPVYVNA  180
KQYHGILRRR QSRAKAELEK KVIRNRKPYL HESRHLHAMR RARGNGGRFL NTKKLENKSS  240
SVSSEKGNNS GANPSANSFN TLHRLTNNEN LGSSNMVQDM HRVQSLNNGY HNGNGLTALY  300
LSQVNGKKGG RRLLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20173233262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027909002.10.0nuclear transcription factor Y subunit A-9-like
RefseqXP_027909003.10.0nuclear transcription factor Y subunit A-9-like
RefseqXP_027909004.10.0nuclear transcription factor Y subunit A-9-like
TrEMBLA0A4D6LAY60.0A0A4D6LAY6_VIGUN; Nuclear transcription factor Y
STRINGXP_007133814.11e-171(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.49e-36nuclear factor Y, subunit A1