PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002075
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 322aa    MW: 34800.4 Da    PI: 7.763
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45941102PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-13065PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.14.9e-3461117358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                  +v+YkeClkNhAa+lGgha+DGCgEfmps++++ ++++++kCaACgCHRnFHRre++
    Vun002075  61 AVTYKECLKNHAANLGGHALDGCGEFMPSPTATaADPSSIKCAACGCHRNFHRREPD 117
                  689***************************99999*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2362115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.0E-2862116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-3063115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.13764115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.11E-19187256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-30189257IPR009057Homeodomain-like
TIGRFAMsTIGR015655.9E-27195252IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDITPTTTIN NTTPSATTKS PEHDTETPTR INTPTATKAL SFSNGVLKRH HHHHHHPVPA  60
AVTYKECLKN HAANLGGHAL DGCGEFMPSP TATAADPSSI KCAACGCHRN FHRREPDEPP  120
IASTTQVIEY QPQHRHHPPP PFQSAAAANR SPNSASPPPI SSSYYPSAPH MLLALSAGLA  180
APPESTAAPS TALTRKRFRT KFSQEQKEKM HKFAEKVGWK MQKRDEDLIH EFCNEVGVDR  240
SVLKVWMHNN KNTLAKKDNV NITSNDDLTN NINDNDANGG AKGFEDHNTN IGGGGAEDRA  300
EDPSRNHFGG VNVGANGSSS TS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-221942531675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027925969.10.0zinc-finger homeodomain protein 9-like
SwissprotQ9LXG02e-76ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A4D6NHY00.0A0A4D6NHY0_VIGUN; Uncharacterized protein
STRINGXP_007139577.11e-164(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.16e-63homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]