PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001984
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 328aa    MW: 35129.4 Da    PI: 6.4116
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45969230PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-2750PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.8e-08238258526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C +far G+Ck G +C+F Hg
  Vun001984 238 PCLYFAR-GYCKNGTSCRFLHG 258
                8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.206233260IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-4235259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5236258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5237258IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-5238258IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDGYEATRIV FARIQNLDPE NASKIMGVLL LQDHGEKEMI RLAFGPEALV HSVILKARKE  60
LGLPSNSPPT PSTPPSPSPF LSRQSSTSSR LGAINLPPAL TIPNPSSTSS SWPTMSELQT  120
PDGLMSPNHL VVGSSTSSSS LPFYVNGGSD PIDDFQLQDQ LSFLNDGSPT STALAHKTNN  180
PDLFYPAHSD LSSSPTGVAD PALFPSYGWG GSLHRRSCSV NDACLGSEDP NSGLGWKPCL  240
YFARGYCKNG TSCRFLHGGL GDADGAAAMV GSPSKIEMME QCHELFRSKS SQQHRLAAAS  300
QLMGSPTFPY SPKCMNLLLQ QQQSETQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027911235.10.0zinc finger CCCH domain-containing protein 53-like isoform X3
RefseqXP_027911236.10.0zinc finger CCCH domain-containing protein 53-like isoform X4
TrEMBLA0A4D6LLK30.0A0A4D6LLK3_VIGUN; Uncharacterized protein
STRINGXP_007131442.10.0(Phaseolus vulgaris)