PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Publication

Basic Information? help Back to Top

TF ID

Vun001452

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 368aa MW: 40624.9 Da PI: 7.3959

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45801174	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-2486	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.2e-11	91	139	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ + rE+ RRdr+N+ f+eL l ++ +K++Ka+iL+++v+ +k+L Vun001452 91 KVLKADREKLRRDRLNEHFQELGNTLDPD----RPKNDKATILTETVQMLKDL 139 566789******************997....79**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-14	86	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.07E-8	89	143	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-12	89	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.586	89	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-9	91	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-7	95	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
XAHASCVSLP KNRFLDEIQI VAVAAQTPPT PNTHTIMDHP NPPLSSQPKL ASESTLHRAT 60 PTSNRFRSSQ LLREREGKGE GEKEDSNASR KVLKADREKL RRDRLNEHFQ ELGNTLDPDR 120 PKNDKATILT ETVQMLKDLT AEVNRLKTEH KALSEESHEL MQEKNELREE KTSLKSDIEN 180 LNAQYQQRVR IMFPWTAIDH SVVISPPYSY PLPIPIPPAP ISIHPSLQPF PFFGNQNPGP 240 IPSPCSMYVP YSTPTNAPVD PPSVLYASTS HVSNQRESFS KSSGNRRPGS DAERCSESHD 300 VATELELKMP GSSSTQQDCT SGGRKGKHSV IRDRTIIGGS AGSASSRYSS SQGLQDSSNS 360 VSDIPKTD

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

XAHASCVSLP KNRFLDEIQI VAVAAQTPPT PNTHTIMDHP NPPLSSQPKL ASESTLHRAT  60
PTSNRFRSSQ LLREREGKGE GEKEDSNASR KVLKADREKL RRDRLNEHFQ ELGNTLDPDR  120
PKNDKATILT ETVQMLKDLT AEVNRLKTEH KALSEESHEL MQEKNELREE KTSLKSDIEN  180
LNAQYQQRVR IMFPWTAIDH SVVISPPYSY PLPIPIPPAP ISIHPSLQPF PFFGNQNPGP  240
IPSPCSMYVP YSTPTNAPVD PPSVLYASTS HVSNQRESFS KSSGNRRPGS DAERCSESHD  300
VATELELKMP GSSSTQQDCT SGGRKGKHSV IRDRTIIGGS AGSASSRYSS SQGLQDSSNS  360
VSDIPKTD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027915386.1	0.0	transcription factor bHLH121-like
Swissprot	Q9LT23	6e-74	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A4D6LLZ3	0.0	A0A4D6LLZ3_VIGUN; Myc-type
STRING	XP_007153217.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	5e-58	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]