PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001156
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 397aa    MW: 43584 Da    PI: 8.512
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45798460PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-19886PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.4e-111036127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C+++ rtG C++G++C+F+H+p
  Vun001156 10 PGEPDCSYYIRTGLCRFGATCRFNHPP 36
               5789*********************97 PP
2zf-CCCH35.81.4e-115781327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               +++C+++++tGtCk+G++C+F+H++
  Vun001156 57 QPECQYHLKTGTCKFGATCRFHHPR 81
               799********************96 PP
3zf-CCCH37.44.2e-12103127327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +++rtG+Ck+G++CkF+H++
  Vun001156 103 EPDCAYYLRTGQCKFGNTCKFHHPQ 127
                789********************97 PP
4zf-CCCH38.71.7e-12259284227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+f+++tG Ck+G+ C+F+H++
  Vun001156 259 DQPECQFYMKTGDCKFGAVCRFHHPR 284
                689*********************96 PP
5zf-CCCH38.22.3e-12304330127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++lC f++r+G+Ck+G++CkF H++
  Vun001156 304 PGEPLCVFYSRYGICKFGPSCKFDHPM 330
                589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-4936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9761037IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-81136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-51437IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-41535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4365482IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-55481IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-95781IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-65883IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-46081IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713100128IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-10103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4106126IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5257284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624257285IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9259284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5260286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5263285IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7303330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821303331IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5306330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4308328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MESGPYPEHP GEPDCSYYIR TGLCRFGATC RFNHPPNRKL AIAAARMKGE FPERIGQPEC  60
QYHLKTGTCK FGATCRFHHP RDKAGIAGRV ALNILGYPLR PNEPDCAYYL RTGQCKFGNT  120
CKFHHPQPNN MALSMRSSPV YPGVQSPTTP GQQSYATGIT NWPSSSYIPS PRWQSPSSYA  180
PLILPQGMVS VPSWSAYSGQ MGSDSSQQTM GNGQSYGTNR QSEPTNARSQ GAYSQFRSGS  240
VPVGFYALQR ENIFPERPDQ PECQFYMKTG DCKFGAVCRF HHPRERMIPA PDCVLSPIGL  300
PLRPGEPLCV FYSRYGICKF GPSCKFDHPM GVFTYNISAS PSADAPGRRM LGSSSGTSAL  360
NLSSEVLVES GSANPRRLSL SETRQIPSGD DNIDEEG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027930076.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0L9U2M20.0A0A0L9U2M2_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TVL00.0A0A1S3TVL0_VIGRR; zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_007139732.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-168zinc finger protein 1