PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Publication

Basic Information? help Back to Top

TF ID

Vun000610

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C3H

Protein Properties

Length: 518aa MW: 56461.6 Da PI: 7.1559

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45826421	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-19978	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.8e-07	93	113	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Vun000610 93 PCPEFRK-GACRRGDMCEYAHG 113 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	9.5E-6	88	114	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.3E-5	93	113	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	93	115	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.4E-4	121	151	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	47	123	146	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
XSPENGLPSS PMASKFTDAT VNSASEKKEY PIDPSLPDIK NSIYATDEFR MFSFKVRPCS 60 RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPEFRKG ACRRGDMCEY AHGVFECWLH 120 PAQYRTRLCK DGVSCNRRVC FFAHTAEELR PLYVSTGSAV PSPRSSASTP NVMDMAAAMS 180 LFPGSPSSLS AMSPSPFAQQ MSPSTGGISH SSSAWPQPNV PALHLPGSNI QTSRLRSSLN 240 ARDMPPEDLD VLQDFDGQQH LLNDLSCFSQ PRPGAISVSR SGRSKTLTPS NLDDLFSAEI 300 SSSPRYSDPA AACVFSPTHK SAVFNQFQQL QSSLSPINTS VSSPRNVEHT LLQASFGVSS 360 PGRMSPRSLE PISPMSARLS AFAQRDKQQQ QQQLRSLSSR DLGAHNPVSI VGSPGNSWSN 420 WGSPHGNGKV DWSVNGNELG RLQRSSSFEL GNNGEEPDLS WVQSLVKESP SEIKEKLAGS 480 GGPVVSADGQ NSNPQVESID HSVLGAWLEQ MQLDQLVV

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

XSPENGLPSS PMASKFTDAT VNSASEKKEY PIDPSLPDIK NSIYATDEFR MFSFKVRPCS  60
RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPEFRKG ACRRGDMCEY AHGVFECWLH  120
PAQYRTRLCK DGVSCNRRVC FFAHTAEELR PLYVSTGSAV PSPRSSASTP NVMDMAAAMS  180
LFPGSPSSLS AMSPSPFAQQ MSPSTGGISH SSSAWPQPNV PALHLPGSNI QTSRLRSSLN  240
ARDMPPEDLD VLQDFDGQQH LLNDLSCFSQ PRPGAISVSR SGRSKTLTPS NLDDLFSAEI  300
SSSPRYSDPA AACVFSPTHK SAVFNQFQQL QSSLSPINTS VSSPRNVEHT LLQASFGVSS  360
PGRMSPRSLE PISPMSARLS AFAQRDKQQQ QQQLRSLSSR DLGAHNPVSI VGSPGNSWSN  420
WGSPHGNGKV DWSVNGNELG RLQRSSSFEL GNNGEEPDLS WVQSLVKESP SEIKEKLAGS  480
GGPVVSADGQ NSNPQVESID HSVLGAWLEQ MQLDQLVV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027905456.1	0.0	zinc finger CCCH domain-containing protein 30-like isoform X2
Swissprot	Q10EL1	0.0	C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A4D6M4Z1	0.0	A0A4D6M4Z1_VIGUN; Transcription elongation factor SPT5
STRING	XP_007148879.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]