PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g13430.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 302aa    MW: 33779 Da    PI: 7.9332
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g13430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l+d+v+ +G g+W++++++ g+ R++k+c++ w +yl
  Vradi11g13430.1 14 KGPWTPDEDKKLLDYVRNYGHGNWRSVPAKAGLQRCGKSCRLXWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.13.1e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eEd  +++++++lG++ W+ Ia++++  Rt++++k++w++
  Vradi11g13430.1  67 RGNFSAEEDRTIIQLHALLGNR-WSIIAAHLP-QRTDNEIKNYWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.491961IPR017930Myb domain
SuperFamilySSF466891.21E-3011108IPR009057Homeodomain-like
SMARTSM007175.1E-121363IPR001005SANT/Myb domain
PfamPF002495.2E-161461IPR001005SANT/Myb domain
CDDcd001673.10E-101661No hitNo description
PROSITE profilePS5129425.11662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2665117IPR009057Homeodomain-like
SMARTSM007178.8E-1666114IPR001005SANT/Myb domain
PfamPF002494.7E-1567110IPR001005SANT/Myb domain
CDDcd001672.97E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRMPCCEKV GLKKGPWTPD EDKKLLDYVR NYGHGNWRSV PAKAGLQRCG KSCRLXWINY  60
LKPGIKRGNF SAEEDRTIIQ LHALLGNRWS IIAAHLPQRT DNEIKNYWNT NIKKRLIRMG  120
LDPITHKTIK QNTFEPFGGG HDNPKDSINI CHEAQWESAR LEAEARGSML QIGSSNLSEL  180
ILRKIPTEPY LSAHTVSTEH NTVYNMYALV LAPNHDFRSS VSTLIIPTLP AVSNTAQITS  240
KESSLSYKSD NSIMGASGQS QKVMEGWVSN LQDDDIMVAV EAFRTEGSES IEELFNESTS  300
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g13430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519833.10.0transcription factor MYB106-like
SwissprotQ9LE631e-80MY106_ARATH; Transcription factor MYB106
TrEMBLA0A1S3VN750.0A0A1S3VN75_VIGRR; transcription factor MYB106-like
STRINGXP_007153565.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-82myb domain protein 16